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Pathogenomic Analysis of Wheat Yellow Rust Lineages Detects Seasonal Variation and Host Specificity.

Identifieur interne : 000263 ( Main/Exploration ); précédent : 000262; suivant : 000264

Pathogenomic Analysis of Wheat Yellow Rust Lineages Detects Seasonal Variation and Host Specificity.

Auteurs : Vanessa Bueno-Sancho [Royaume-Uni] ; Antoine Persoons [Royaume-Uni] ; Amelia Hubbard [Royaume-Uni] ; Luis Enrique Cabrera-Quio [Royaume-Uni] ; Clare M. Lewis [Royaume-Uni] ; Pilar Corredor-Moreno [Royaume-Uni] ; Daniel C E. Bunting [Royaume-Uni] ; Sajid Ali [Pakistan] ; Soonie Chng [Nouvelle-Zélande] ; David P. Hodson [Éthiopie] ; Ricardo Madariaga Burrows [Chili] ; Rosie Bryson [Allemagne] ; Jane Thomas [Royaume-Uni] ; Sarah Holdgate [Royaume-Uni] ; Diane G O. Saunders [Royaume-Uni]

Source :

RBID : pubmed:29177504

Descripteurs français

English descriptors

Abstract

Recent disease outbreaks caused by (re-)emerging plant pathogens have been associated with expansions in pathogen geographic distribution and increased virulence. For example, in the past two decades' wheat yellow (stripe) rust, Puccinia striiformis f. sp. tritici, has seen the emergence of new races that are adapted to warmer temperatures, have expanded virulence profiles, and are more aggressive than previous races, leading to wide-scale epidemics. Here, we used field-based genotyping to generate high-resolution data on P. striiformis genetics and carried out global population analysis. We also undertook comparative analysis of the 2014 and 2013 UK populations and assessed the temporal dynamics and host specificity of distinct pathogen genotypes. Our analysis revealed that P. striiformis lineages recently detected in Europe are extremely diverse and in fact similar to globally dispersed populations. In addition, we identified a considerable shift in the UK P. striiformis population structure including the first identification of one infamous race known as Kranich. Next, by establishing the genotype of both the pathogen and host within a single infected field sample, we uncovered evidence for varietal specificity for genetic groups of P. striiformis. Finally, we found potential seasonal specificity for certain genotypes of the pathogen with several lineages identified only in samples collected in late spring and into the summer, whereas one lineage was identified throughout the wheat growing season. Our discovery of which wheat varieties are susceptible to which specific P. striiformis isolates, and when those isolates are prevalent throughout the year, represents a powerful tool for disease management.

DOI: 10.1093/gbe/evx241
PubMed: 29177504
PubMed Central: PMC5730935


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

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<front>
<div type="abstract" xml:lang="en">Recent disease outbreaks caused by (re-)emerging plant pathogens have been associated with expansions in pathogen geographic distribution and increased virulence. For example, in the past two decades' wheat yellow (stripe) rust, Puccinia striiformis f. sp. tritici, has seen the emergence of new races that are adapted to warmer temperatures, have expanded virulence profiles, and are more aggressive than previous races, leading to wide-scale epidemics. Here, we used field-based genotyping to generate high-resolution data on P. striiformis genetics and carried out global population analysis. We also undertook comparative analysis of the 2014 and 2013 UK populations and assessed the temporal dynamics and host specificity of distinct pathogen genotypes. Our analysis revealed that P. striiformis lineages recently detected in Europe are extremely diverse and in fact similar to globally dispersed populations. In addition, we identified a considerable shift in the UK P. striiformis population structure including the first identification of one infamous race known as Kranich. Next, by establishing the genotype of both the pathogen and host within a single infected field sample, we uncovered evidence for varietal specificity for genetic groups of P. striiformis. Finally, we found potential seasonal specificity for certain genotypes of the pathogen with several lineages identified only in samples collected in late spring and into the summer, whereas one lineage was identified throughout the wheat growing season. Our discovery of which wheat varieties are susceptible to which specific P. striiformis isolates, and when those isolates are prevalent throughout the year, represents a powerful tool for disease management.</div>
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<Year>2018</Year>
<Month>11</Month>
<Day>13</Day>
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<Journal>
<ISSN IssnType="Electronic">1759-6653</ISSN>
<JournalIssue CitedMedium="Internet">
<Volume>9</Volume>
<Issue>12</Issue>
<PubDate>
<Year>2017</Year>
<Month>12</Month>
<Day>01</Day>
</PubDate>
</JournalIssue>
<Title>Genome biology and evolution</Title>
<ISOAbbreviation>Genome Biol Evol</ISOAbbreviation>
</Journal>
<ArticleTitle>Pathogenomic Analysis of Wheat Yellow Rust Lineages Detects Seasonal Variation and Host Specificity.</ArticleTitle>
<Pagination>
<MedlinePgn>3282-3296</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1093/gbe/evx241</ELocationID>
<Abstract>
<AbstractText>Recent disease outbreaks caused by (re-)emerging plant pathogens have been associated with expansions in pathogen geographic distribution and increased virulence. For example, in the past two decades' wheat yellow (stripe) rust, Puccinia striiformis f. sp. tritici, has seen the emergence of new races that are adapted to warmer temperatures, have expanded virulence profiles, and are more aggressive than previous races, leading to wide-scale epidemics. Here, we used field-based genotyping to generate high-resolution data on P. striiformis genetics and carried out global population analysis. We also undertook comparative analysis of the 2014 and 2013 UK populations and assessed the temporal dynamics and host specificity of distinct pathogen genotypes. Our analysis revealed that P. striiformis lineages recently detected in Europe are extremely diverse and in fact similar to globally dispersed populations. In addition, we identified a considerable shift in the UK P. striiformis population structure including the first identification of one infamous race known as Kranich. Next, by establishing the genotype of both the pathogen and host within a single infected field sample, we uncovered evidence for varietal specificity for genetic groups of P. striiformis. Finally, we found potential seasonal specificity for certain genotypes of the pathogen with several lineages identified only in samples collected in late spring and into the summer, whereas one lineage was identified throughout the wheat growing season. Our discovery of which wheat varieties are susceptible to which specific P. striiformis isolates, and when those isolates are prevalent throughout the year, represents a powerful tool for disease management.</AbstractText>
<CopyrightInformation>© The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.</CopyrightInformation>
</Abstract>
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<Author ValidYN="Y">
<LastName>Bueno-Sancho</LastName>
<ForeName>Vanessa</ForeName>
<Initials>V</Initials>
<AffiliationInfo>
<Affiliation>Crop Genetics, John Innes Centre, Norwich Research Park, United Kingdom.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Persoons</LastName>
<ForeName>Antoine</ForeName>
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<AffiliationInfo>
<Affiliation>Crop Genetics, John Innes Centre, Norwich Research Park, United Kingdom.</Affiliation>
</AffiliationInfo>
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<LastName>Hubbard</LastName>
<ForeName>Amelia</ForeName>
<Initials>A</Initials>
<AffiliationInfo>
<Affiliation>ational Institute of Agricultural Botany, Cambridge, United Kingdom.</Affiliation>
</AffiliationInfo>
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<LastName>Cabrera-Quio</LastName>
<ForeName>Luis Enrique</ForeName>
<Initials>LE</Initials>
<AffiliationInfo>
<Affiliation>Earlham Institute, Norwich Research Park, United Kingdom.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>The Sainsbury Laboratory, Norwich Research Park, United Kingdom.</Affiliation>
</AffiliationInfo>
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<LastName>Lewis</LastName>
<ForeName>Clare M</ForeName>
<Initials>CM</Initials>
<AffiliationInfo>
<Affiliation>Crop Genetics, John Innes Centre, Norwich Research Park, United Kingdom.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Corredor-Moreno</LastName>
<ForeName>Pilar</ForeName>
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</AffiliationInfo>
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<ForeName>Daniel C E</ForeName>
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</AffiliationInfo>
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<LastName>Ali</LastName>
<ForeName>Sajid</ForeName>
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<AffiliationInfo>
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</AffiliationInfo>
</Author>
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<LastName>Chng</LastName>
<ForeName>Soonie</ForeName>
<Initials>S</Initials>
<AffiliationInfo>
<Affiliation>The New Zealand Institute for Plant & Food Research, Lincoln, New Zealand.</Affiliation>
</AffiliationInfo>
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<LastName>Hodson</LastName>
<ForeName>David P</ForeName>
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</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Madariaga Burrows</LastName>
<ForeName>Ricardo</ForeName>
<Initials>R</Initials>
<AffiliationInfo>
<Affiliation>National Institute of Agricultural Research, INIA, Chile.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Bryson</LastName>
<ForeName>Rosie</ForeName>
<Initials>R</Initials>
<AffiliationInfo>
<Affiliation>BASF SE, Agricultural Centre, Limburgerhof, Germany.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Thomas</LastName>
<ForeName>Jane</ForeName>
<Initials>J</Initials>
<AffiliationInfo>
<Affiliation>ational Institute of Agricultural Botany, Cambridge, United Kingdom.</Affiliation>
</AffiliationInfo>
</Author>
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<ForeName>Sarah</ForeName>
<Initials>S</Initials>
<AffiliationInfo>
<Affiliation>ational Institute of Agricultural Botany, Cambridge, United Kingdom.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Saunders</LastName>
<ForeName>Diane G O</ForeName>
<Initials>DGO</Initials>
<AffiliationInfo>
<Affiliation>Crop Genetics, John Innes Centre, Norwich Research Park, United Kingdom.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
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<Grant>
<GrantID>BB/P016855/1 </GrantID>
<Agency>Biotechnology and Biological Sciences Research Council</Agency>
<Country>United Kingdom</Country>
</Grant>
<Grant>
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<Agency>Biotechnology and Biological Sciences Research Council</Agency>
<Country>United Kingdom</Country>
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<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
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<MeshHeading>
<DescriptorName UI="D004196" MajorTopicYN="N">Disease Outbreaks</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D016681" MajorTopicYN="N">Genome, Fungal</DescriptorName>
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<MeshHeading>
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<MeshHeading>
<DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D059014" MajorTopicYN="N">High-Throughput Nucleotide Sequencing</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D058507" MajorTopicYN="Y">Host Specificity</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
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<MeshHeading>
<DescriptorName UI="D012621" MajorTopicYN="N">Seasons</DescriptorName>
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<MeshHeading>
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<Keyword MajorTopicYN="Y">pathogenomics</Keyword>
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<ArticleId IdType="pmc">PMC5730935</ArticleId>
</ArticleIdList>
<ReferenceList>
<Reference>
<Citation>Bioinformatics. 2006 Nov 1;22(21):2688-90</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16928733</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Phytopathology. 2016 Apr;106(4):380-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26756826</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Mol Evol. 1983;19(2):153-70</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">6571220</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Anim Genet. 2012 Aug;43(4):419-28</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22497629</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Genomics. 2016 May 18;17 :370</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27194050</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Annu Rev Phytopathol. 2008;46:75-100</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18680424</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Ecology. 2011 Dec;92(12):2159-66</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22352153</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Fungal Genet Biol. 2014 Sep;70:77-85</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25042987</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genetics. 2000 Jun;155(2):945-59</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">10835412</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genome Biol. 2015 Mar 02;16:44</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25853180</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Ecol Resour. 2016 Jul;16(4):845-61</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26858112</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Ecol. 2017 Apr;26(7):1902-1918</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">28012228</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2013 Dec 19;8(12):e84136</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24367635</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2009 Sep 1;25(17):2283-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19542151</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Genet. 2010 Oct 15;11:94</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20950446</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS Pathog. 2013;9(7):e1003503</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23935484</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Science. 2010 Jul 23;329(5990):369</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20651122</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genetics. 2007 Jul;176(3):1635-51</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17483417</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2009 Aug 15;25(16):2078-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19505943</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Phytopathology. 2010 May;100(5):432-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20373963</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Fungal Genet Biol. 2016 Feb;87:1-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26724600</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Ecol. 2007 Nov;16(21):4637-47</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17887968</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Phytopathology. 2009 Jan;99(1):89-94</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19055439</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Ecol. 2017 Apr;26(7):1991-2005</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27862555</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Bioinformatics. 2017 Mar 24;18(1):192</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">28340552</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Ecol Resour. 2008 Jan;8(1):103-6</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21585727</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Biol. 2016 Oct 3;14 (1):84</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27716181</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Evol Biol. 2008 Jan;21(1):122-32</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18028352</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant Biotechnol J. 2014 Aug;12(6):787-96</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24646323</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Annu Rev Phytopathol. 2012;50:219-39</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22920559</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2011;6(8):e24230</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21909385</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Rev Genet. 2014 Dec;15(12):797-813</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25266034</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Genet. 2016 Feb;48(2):201-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26752267</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Fly (Austin). 2012 Apr-Jun;6(2):80-92</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22728672</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Genome Biol. 2015 Feb 25;16:23</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25723868</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Genet. 2012 Apr 11;13:27</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22494792</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Ecol. 2015 Nov;24(22):5657-75</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26453896</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2016 Feb 01;11(2):e0148385</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26828428</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Ecol Lett. 2006 Apr;9(4):467-84</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16623732</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Science. 2002 Jul 26;297(5581):537-41</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">12142520</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Evol Appl. 2012 Jun;5(4):341-52</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25568055</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2007 Jan 1;23(1):127-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17050570</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Ecol. 2011 Jul;20(13):2739-55</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">21627704</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
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